R Canis Majoris is the prototype of a small group of Algol-type stars showing short orbital periods and low mass ratios . A previous detection of short-term oscillations in its light curve has not yet been confirmed . We investigate a new time series of high-resolution spectra with the aim to derive improved stellar and system parameters , to search for the possible impact of a third component in the observed spectra , to look for indications of activity in the Algol system , and to search for short-term variations in radial velocities . We disentangled the composite spectra into the spectra of the binary components . Then we analysed the resulting high signal-to-noise spectra of both stars . Using a newly developed program code based on an improved method of least-squares deconvolution , we were able to determine the radial velocities of both components also during primary eclipse . This allowed us to develop a better model of the system including the Rossiter–McLaughlin effect and to derive improved orbital parameters . Combining the results with those from spectrum analysis , we obtain accurate stellar and system parameters . We further deduce at least one oscillation frequency of 21.38 c d ^ { -1 } . It could be detected during primary eclipses only and confirms a previous photometric finding . Results point to an amplitude amplification of non-radial pulsation modes due to the eclipse mapping effect . The presence of a He I line in the spectra indicates mass transfer in the R CMa system . Calculations of its Roche geometry give evidence that the cool secondary component may fill its Roche lobe . No evidence of a third body in the system could be found in the observed spectra .